PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01008.1.g00200.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 417aa    MW: 46046.9 Da    PI: 9.726
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01008.1.g00200.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.6e-20173223256
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                                    y+GVr+++ +g+W+AeIrdp+    r +r +lg+f+taeeAa+a+++a+++++g+
  Zpz_sc01008.1.g00200.1.am.mk 173 VYRGVRQRP-WGKWAAEIRDPR----RaARKWLGTFDTAEEAARAYDRAALEFRGA 223
                                   69*******.**********82....48*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-14173222IPR001471AP2/ERF domain
SMARTSM003801.6E-35173236IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-23173231IPR016177DNA-binding domain
PROSITE profilePS5103225.304173230IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-32173231IPR001471AP2/ERF domain
PRINTSPR003672.8E-11174185IPR001471AP2/ERF domain
CDDcd000182.10E-32174232No hitNo description
PRINTSPR003672.8E-11196212IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MWPGAGPEVS PCAVCLSMSG SVYKSLHLQV PAPVQTHSKL RLISHLAQSS VMTKKLVHAM  60
ATSKRGPGAQ IDNQRKQVSD YADGRTMISH EQEHGIIVAA LRHVLSGYST PPPEVVTVAS  120
GEACGVCGID GCLGCDFFTD DKAGPPELTQ GVSCGTVTGG AEKRRRRRTR NNVYRGVRQR  180
PWGKWAAEIR DPRRAARKWL GTFDTAEEAA RAYDRAALEF RGARAKLNFP HQEGPFLGHH  240
GGDLIAATTE TLTPPSPCSG DAEESAPGVW QMGGPDGPGD ELWDGLRDQR QAIRRWGPRR  300
LNFVGISALH RYLQSPELCA CSFFLVELFR LTVHLSASLV VRSCLLMEDC GETPLAAASG  360
RRPVLHCSVL VVKEVIVVHH IVVVLVQACK HPSSWRLWWR WLRMPVPRRP GHRRRRW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-21174230663ATERF1
3gcc_A4e-21174230663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162167KRRRRR
2163168RRRRRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0671953e-65AK067195.1 Oryza sativa Japonica Group cDNA clone:J013098P10, full insert sequence.
GenBankAP0058913e-65AP005891.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:B1045B05.
GenBankAP0149653e-65AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126173e-65CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
GenBankEU6229343e-65EU622934.1 Oryza sativa Indica Group EATB (EATB) mRNA, complete cds.
GenBankKP2128993e-65KP212899.1 Oryza sativa Indica Group cultivar IR64-Sub1 AP2 domain containing protein (EATB) gene, complete cds.
GenBankKP2129003e-65KP212900.1 Oryza sativa Indica Group cultivar PS-2 AP2 domain containing protein (EATB) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001144222.23e-80ethylene-responsive transcription factor ERF109-like
TrEMBLK3ZW744e-79K3ZW74_SETIT; Uncharacterized protein
STRINGSi030856m1e-78(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.12e-22redox responsive transcription factor 1